Australian New Crops Info 2016
Supported by the Rural Industries Research and Development Corporation

Listing of Interesting Plants of the World:

Nicotiana umbratica

 

 

This species name is described as Unresolved in The Plant List

 

This species has no synonyms in The Plant List

 

No common names have been found

 

 

Trends (five databases) 1901-2013:
[Number of papers mentioning Nicotiana umbratica: 33]

 

 

Popularity of Nicotiana umbratica over time
[Left-hand Plot: Plot of numbers of papers mentioning Nicotiana umbratica (histogram and left hand axis scale of left-hand plot) and line of best fit, 1901 to 2013 (equation and % variation accounted for in box); Right-hand Plot: Plot of a proportional micro index, derived from numbers of papers mentioning Nicotiana umbratica as a proportion (scaled by multiplying by one million) of the approximate total number of papers available in databases for that year (frequency polygon and left-hand axis scale of right-hand plot) and line of best fit, 1901 to 2013 (equation and % variation accounted for in box)] 

[For larger charts showing the numbers of papers that have mentioned this species over years, select this link; there are links to come back from there]

 

Keywords

[Total number of keywords included in the papers that mentioned this species: 97]

 

Nicotiana (6), Alternaria alternata (3), disease resistance (2), fatty acids (2), fumonisins (2), Glutamine synthetase (2), Homoploid hybridization (2), Low-copy nuclear gene (2), mycotoxins (2), nicotiana umbratica (2), plant breeding (2), plant genetics (2), plant morphology (2), Polyploidy (2), Recombination (2), Solanum lycopersicum var. lycopersicum (2), AAL toxins (1), acylsugars (1), Allopolyploidy (1), apoptosis (1), Australian arid zone (1), biogeographical tracks (1), biological resistance (1), cankers (1), cell biology (1), chromosome evolution (1), codominance (1), colonization (1), ESI/MS (1), FAD (1), fertility (1), FMN (1), gene expression (1), genes (1), genetic resistance (1), genotype (1), geographic distribution (1), historical biogeography (1), HPLC-ELSD (1), insect resistance (1), Internet resource (1), interspecific hybridization (1), lipid metabolism (1), loci (1), Lycopersicon pennellii (1), matK (1), mutation (1), NADPH oxidase (1), ndhF (1), nicotiana acuminata (1), nicotiana bonariensis (1), Nicotiana langsdorffii (1), Nicotiana section Suaveolentes (1), nicotiana spegazzinii (1), nitric oxide (1), Normal-phase LC (1), paralogy-free subtree analysis (1), Petunia (1), Petunia hybrida (1), Phylogeny (1), plant anatomy (1), riboflavin (1), RPLC (1), simulation models (1), Solanaceae (1), Solanum pennellii var. pennellii (1), stems (1), sterility (1), symptoms (1), tobacco (1), Tobacco cuticular components (1), trichomes (1), trnL-F (1), trnS-G (1), vicariance (1), wild tomato (1)

 

[If all keywords are not here (as indicated by .....), they can be accessed from this link; there are links to come back from there]

 

 

Most likely scope for crop use/product (%):
[Please note: When there are only a few papers mentioning a species, care should be taken with the interpretation of these crop use/product results; as well, a mention may relate to the use of a species, or the context in which it grows, rather than a product]

 

poison (42.49), oilseed/fat (30.04), grain legume (6.47), sweetener (5.96), timber (2.04), fruit (1.63), weed (1.23), medicinal (1.22), ornamental (1.03), starch (0.74)…..

 

[To see the full list of crop use/product outcomes, from searching abstracts of the papers that have mentioned this species, select this link; details of the analysis process have also been included; there are links to come back from there]

 

 

Recent mentions of this species in the literature:
[since 2012, with links to abstracts; The references from 1901-2013 which have been used for the trend, keyword and crop use/product analyses below, are listed below these references]

 

Tartaglio V, Rennie EA, Cahoon R, Wang G, Baidoo E, Mortimer JC, Cahoon EB and Scheller HV (2017) Glycosylation of inositol phosphorylceramide sphingolipids is required for normal growth and reproduction in Arabidopsis. The Plant Journal 89, 278-290. http://dx.doi.org/10.1111/tpj.13382

Liu A-C and Cheng C-P (2016) Pathogen-induced ERF68 regulates hypersensitive cell death in tomato. Molecular Plant Pathology, n/a-n/a. http://dx.doi.org/10.1111/mpp.12460

Jia C, Zhang L, Liu L, Wang J, Li C and Wang Q (2013) Multiple phytohormone signalling pathways modulate susceptibility of tomato plants to Alternaria alternata f. sp. lycopersici. J. Exp. Bot. 64, 637-650. http://jxb.oxfordjournals.org/cgi/content/abstract/64/2/637

Mase K, Ishihama N, Mori H, Takahashi H, Kaminaka H, Kodama M and Yoshioka H (2013) Ethylene-Responsive AP2 ERF Transcription Factor MACD1 Participates in Phytotoxin-Triggered Programmed Cell Death. Molecular plant-microbe interactions. 26, 868-879. http://dx.doi.org/10.1094%2FMPMI-10-12-0253-R

Heinz E (2012) Chapter 6 - PLANT GLYCOLIPIDS: STRUCTURE, ISOLATION AND ANALYSIS A2 - Christie, William W. In ‘Advances in Lipid Methodology’ (Ed.^(Eds  pp. 211-332. (Woodhead Publishing). //www.sciencedirect.com/science/article/pii/B9780951417164500092

Mase K, Mizuno T, Ishihama N, Fujii T, Mori H, Kodama M and Yoshioka H (2012) Ethylene signaling pathway and MAPK cascades are required for AAL toxin-induced programmed cell death. Mol Plant Microbe Interact 25, 1015-25.

Mase K, Mizuno T, Ishihama N, Fujii T, Mori H, Kodama M and Yoshioka H (2012) Ethylene Signaling Pathway and MAPK Cascades Are Required for AAL Toxin–Induced Programmed Cell Death. Molecular plant-microbe interactions. 25, 1015-1025. http://dx.doi.org/10.1094%2FMPMI-02-12-0036-R

 

 

References 1901-2013 (and links to abstracts):
[Number of papers mentioning Nicotiana umbratica: 33; Any undated papers have been included at the end]

 

Jia C, Zhang L, Liu L, Wang J, Li C and Wang Q (2013) Multiple phytohormone signalling pathways modulate susceptibility of tomato plants to Alternaria alternata f. sp. lycopersici. J. Exp. Bot. 64, 637-650.  http://jxb.oxfordjournals.org/cgi/content/abstract/64/2/637

Mase K, Mizuno T, Ishihama N, Fujii T, Mori H, Kodama M and Yoshioka H (2012) Ethylene signaling pathway and MAPK cascades are required for AAL toxin-induced programmed cell death. Mol Plant Microbe Interact 25, 1015-25.

Ladiges PY, Marks CE and Nelson G (2011) Biogeography of Nicotiana section Suaveolentes (Solanaceae) reveals geographical tracks in arid Australia. Journal of Biogeography 38, 2066-2077.  http://dx.doi.org/10.1111/j.1365-2699.2011.02554.x

Lin M-H, Gresshoff PM, Indrasumunar A and Ferguson BJ (2011) pHairyRed: A Novel Binary Vector Containing the DsRed2 Reporter Gene for Visual Selection of Transgenic Hairy Roots. Mol Plant 4, 537-545.  http://mplant.oxfordjournals.org/cgi/content/abstract/4/3/537

Markham JE, Molino D, et al. (2011) Sphingolipids Containing Very-Long-Chain Fatty Acids Define a Secretory Pathway for Specific Polar Plasma Membrane Protein Targeting in Arabidopsis. PLANT CELL 23, 2362-2378.  http://www.plantcell.org/cgi/content/abstract/23/6/2362

Xu W, Yu Y, Zhou Q, Ding J, Dai L, Xie X, Xu Y, Zhang C and Wang Y (2011) Expression pattern, genomic structure, and promoter analysis of the gene encoding stilbene synthase from Chinese wild Vitis pseudoreticulata. J. Exp. Bot. 62, 2745-2761.  http://jxb.oxfordjournals.org/cgi/content/abstract/62/8/2745

Zhang L, Jia C, Liu L, Zhang Z, Li C and Wang Q (2011) The involvement of jasmonates and ethylene in Alternaria alternata f. sp. lycopersici toxin-induced tomato cell death. J. Exp. Bot. 62, 5405-5418.  http://jxb.oxfordjournals.org/cgi/content/abstract/62/15/5405

Asai S, Mase K and Yoshioka H (2010) A key enzyme for flavin synthesis is required for nitric oxide and reactive oxygen species production in disease resistance. The Plant Journal 62, 911-924.  http://dx.doi.org/10.1111/j.1365-313X.2010.04206.x

Clarkson JJ, Kelly LJ, Leitch AR, Knapp S and Chase MW (2010) Nuclear glutamine synthetase evolution in Nicotiana: Phylogenetics and the origins of allotetraploid and homoploid (diploid) hybrids. Molecular Phylogenetics and Evolution 55, 99-112.  http://www.sciencedirect.com/science/article/pii/S1055790309003972

Ding L, Xie F, Xu G, Liu K, Wang S and Xie J (2010) Separation and detection of polar cuticular components from Oriental tobacco leaf by integration of normal-phase liquid chromatography fractionation with reversed-phase liquid chromatography-mass spectrometry. Journal of Separation Science 33, 3429-3436.  http://dx.doi.org/10.1002/jssc.201000536

Poland JA, Balint-Kurti PJ, Wisser RJ, Pratt RC and Nelson RJ (2009) Shades of gray: the world of quantitative disease resistance. Trends in Plant Science 14, 21-29.  http://www.sciencedirect.com/science/article/pii/S1360138508002975

Xu L and Du L (2006) Direct detection and quantification of Alternaria alternata lycopersici toxins using high-performance liquid chromatography-evaporative light-scattering detection. Journal of Microbiological Methods 64, 398-405.  http://www.sciencedirect.com/science/article/pii/S0167701205001648

Futerman AH and Riezman H (2005) The ins and outs of sphingolipid synthesis. Trends in Cell Biology 15, 312-318.  http://www.sciencedirect.com/science/article/pii/S0962892405001078

Clarkson JJ, Knapp S, Garcia VF, Olmstead RG, Leitch AR and Chase MW (2004) Phylogenetic relationships in Nicotiana (Solanaceae) inferred from multiple plastid DNA regions. Molecular Phylogenetics and Evolution 33, 75-90.  http://www.sciencedirect.com/science/article/pii/S1055790304001447

Chase MW, Knapp S, Cox AV, Clarkson JJ, Butsko Y, Joseph J, Savolainen V and Parokonny AS (2003) Molecular Systematics, GISH and the Origin of Hybrid Taxa in Nicotiana (Solanaceae). Ann. Bot. 92, 107-127.  http://aob.oxfordjournals.org/cgi/content/abstract/92/1/107

Brandwagt BF, Kneppers TJ, Nijkamp HJ and Hille J (2002) Overexpression of the tomato Asc-1 gene mediates high insensitivity to AAL toxins and fumonisin B1 in tomato hairy roots and confers resistance to Alternaria alternata f. sp. lycopersici in Nicotiana umbratica plants. Mol Plant Microbe Interact 15, 35-42.

Brandwagt BF, Kneppers TJA, Nijkamp HJJ and Hille J (2002) Overexpression of the tomato Asc-1 gene mediates high insensitivity to AAL toxins and fumonisin B1 in tomato hairy rootsand confers resistance to Alternaria alternata f. sp. lycopersici in Nicotiana umbratica plants. Molecular plant-microbe interactions : MPMI. 15, 35-42.

Brandwagt BF, Kneppers TJ, Van der Weerden GM, Nijkamp HJ and Hille J (2001) Most AAL toxin-sensitive Nicotiana species are resistant to the tomato fungal pathogen Alternaria alternata f. sp. lycopersici. Mol Plant Microbe Interact 14, 460-70.

Brandwagt BF, Kneppers TJA, Weerden GMvd, Nijkamp HJJ and Hille J (2001) Most AAL toxin-sensitive Nicotiana species are resistant to the tomato fungal pathogen Alternaria alternata f.sp. lycopersici. Molecular plant-microbe interactions : MPMI. 14, 460-470.

Hoeven RSvd and Steffens JC (2000) Biosynthesis and elongation of short- and medium-chain-length fatty acids. Plant physiology. 122, 275-282.  http://www.plantphysiol.org/

van der Hoeven RS and Steffens JC (2000) Biosynthesis and Elongation of Short- and Medium-Chain-Length Fatty Acids. Plant Physiology 122, 275-282.  http://www.plantphysiol.org/cgi/content/abstract/122/1/275

(1999) Index. In ‘Analytical Determination of Nicotine and Related Compounds and their Metabolites’ (Ed.^(Eds John WG and Peyton J, III) pp. 721-758. (Elsevier Science: Amsterdam). http://www.sciencedirect.com/science/article/pii/B9780444500953500188

Li AX, Eannetta N, Ghangas GS and Steffens JC (1999) Glucose Polyester Biosynthesis. Purification and Characterization of a Glucose Acyltransferase. Plant Physiology 121, 453-460.  http://www.plantphysiol.org/cgi/content/abstract/121/2/453

(1997) Graphical abstracts. Tetrahedron 53, v-xiii.  http://www.sciencedirect.com/science/article/pii/S0040402097908656

(1997) Subject index. Tetrahedron 53, 1-154.  http://www.sciencedirect.com/science/article/pii/S004040209880104X

Mizutani M, Koseki K, Ago H, Mori M, Matsuzaki T and Ebata T (1997) A new sesquiterpene from Nicotiana umbratica Burbidge. Tetrahedron 53, 11563-11568.  http://www.sciencedirect.com/science/article/pii/S0040402097007515

Shapiro JA, Steffens JC and Mutschler MA (1994) Acylsugars of the wild tomato Lycopersicon pennellii in relation to geographic distribution of the species. Biochemical Systematics and Ecology 22, 545-561.  http://www.sciencedirect.com/science/article/pii/0305197894900671

Shinozaki Y, Matsuzaki T, Suhara S, Tobita T, Shigematsu H and Koiwai A (1991) New types of glycolipids from the surface lipids of Nicotiana umbratica. Agric Biol Chem 55, 751-6.

Gangadevi T, Rao PN, Rao BH and Satyanarayana KV (1985) A study of morphology, cytology and sterility in interspecific hybrids and amphidiploids of Nicotiana knightiana X Nicotiana umbratica. Theoretical and applied genetics., 3.

Gangadevi T, Rao PN and Satyanarayana KV (1982) Cytogenetic study of an interspecific cross of Nicotiana debneyi X Nicotiana umbratica. Theoretical and applied genetics., 2.

Subhashini U (1976) Allopolyploidy and anueploidy in the genus Nicotiana. Cytologia. 41, 4.

Subhashini U and Gopinath DM (1974) Interspecific hybridization in the genus Nicotiana involvin g a New Australian species Nicotiana umbratica. Cytologia 39, 3.

Subhashini U (1973) Interspecific hybridization in the genus Nicotiana involving a new Australian species Nicotiana umbratica Burbridge. Euphytica 22, 3.

Clarkson JJ, Kelly LJ, Leitch AR, Knapp S and Chase MW Nuclear glutamine synthetase evolution in Nicotiana: Phylogenetics and the origins of allotetraploid and homoploid (diploid) hybrids. Molecular Phylogenetics and Evolution 55, 99-112.  http://www.sciencedirect.com/science/article/pii/S1055790309003972

Lin M-H, Gresshoff PM, Indrasumunar A and Ferguson BJ pHairyRed: A Novel Binary Vector Containing the DsRed2 Reporter Gene for Visual Selection of Transgenic Hairy Roots. Mol Plant 4, 537-545.  http://mplant.oxfordjournals.org/cgi/content/abstract/4/3/537

Markham JE, Molino D, et al. Sphingolipids Containing Very-Long-Chain Fatty Acids Define a Secretory Pathway for Specific Polar Plasma Membrane Protein Targeting in Arabidopsis. PLANT CELL 23, 2362-2378.  http://www.plantcell.org/cgi/content/abstract/23/6/2362

Xu W, Yu Y, Zhou Q, Ding J, Dai L, Xie X, Xu Y, Zhang C and Wang Y Expression pattern, genomic structure, and promoter analysis of the gene encoding stilbene synthase from Chinese wild Vitis pseudoreticulata. J. Exp. Bot. 62, 2745-2761.  http://jxb.oxfordjournals.org/cgi/content/abstract/62/8/2745

Zhang L, Jia C, Liu L, Zhang Z, Li C and Wang Q The involvement of jasmonates and ethylene in Alternaria alternata f. sp. lycopersici toxin-induced tomato cell death. J. Exp. Bot. 62, 5405-5418.  http://jxb.oxfordjournals.org/cgi/content/abstract/62/15/5405

 


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Grateful acknowledgment is made to the following: for plant names: Australian Plant Name Index, Australian National Herbarium http://www.anbg.gov.au/cpbr/databases/apni-search-full.html; ; The International Plant Names Index, Royal Botanic Gardens, Kew/Harvard University Herbaria/Australian National Herbarium http://www.ipni.org/index.html; Plants Database, United States Department of Agriculture, National Resources Conservation Service http://plants.usda.gov/;DJ Mabberley (1997) The Plant Book, Cambridge University Press (Second Edition); JH Wiersma and B Leon (1999) World Economic Plants, CRC Press; RJ Hnatiuk (1990) Census of Australian Vascular Plants, Australian Government Publishing Service; for information: Science Direct http://www.sciencedirect.com/; Wiley Online Library http://onlinelibrary.wiley.com/advanced/search; High Wire http://highwire.stanford.edu/cgi/search; Oxford Journals http://services.oxfordjournals.org/search.dtl; USDA National Agricultural Library http://agricola.nal.usda.gov/booleancube/booleancube_search_cit.html; for synonyms: The Plant List http://www.theplantlist.org/; for common names: http://en.wikipedia.org/wiki/Main_Page; etc.


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